Science_Chemistry_PDBFile

Represents a PDB file, composed of one or more Science_Chemistry_Macromolecule_PDB objects

Represents a PDB file, composed of one or more Science_Chemistry_Macromolecule_PDB objects

Authors Jesus M. Castagnetto <jmcastagnetto@php.net>

Version 1.0

Public Method Summary
object PDBFile	Science_Chemistry_PDBFile(string $filename) Constructor for the class, requires a PDB filename
string	toCML() Returns a CML representation of the PDB file

Private Method Summary
void	parseFile(array $arr) Makes the arrays of all present PDB record types

Private Field Summary
string	$pdb PDB ID
string	$file Full path to PDB file
string	$date PDB file's date
string	$class PDB macromolecule(s) class
array	$meta Array of meta records
array	$macromolecules Array of macromolecular objects
int	$num_macromolecules Number of molecules/subunits

Public Method Details

public object PDBFile Science_Chemistry_PDBFile( string $filename )

Constructor for the class, requires a PDB filename

Parameter

string	$filename

Returns

object PDBFile

;

public string toCML( )

Returns a CML representation of the PDB file
TODO

Returns

string

private void parseFile( array $arr )

Makes the arrays of all present PDB record types

Parameter

array	$arr
	array of lines

Returns

void

Private Field Details
$pdb
private string $pdb >><< PDB ID

$file
private string $file >><< Full path to PDB file

$date
private string $date >><< PDB file's date

$class
private string $class >><< PDB macromolecule(s) class

$meta
private array $meta >><< Array of meta records

$macromolecules
private array $macromolecules >><< Array of macromolecular objects

$num_macromolecules
private int $num_macromolecules >><< Number of molecules/subunits