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Chemical classes - Science_Chemistry

Science_Chemistry_Macromolecule_PDB

Science_Chemistry_Macromolecule
   |
  +-- Science_Chemistry_Macromolecule_PDB

Represents a PDB macromolecule, composed of several

 

public class Science_Chemistry_Macromolecule_PDB extends Science_Chemistry_Macromolecule

Represents a PDB macromolecule, composed of several
Science_Chemistry_Residue_PDB objects

AuthorsJesus M. Castagnetto <jmcastagnetto@php.net>
Version1.0
 

Methods inherited from Science_Chemistry_Macromolecule
science_chemistry_macromolecule, initmacromolecule, addmolecule, getmolecules, ismacromolecule, tostring, tocml

Public Method Summary
object Science_Chemistry_Macromolecule_PDB

Science_Chemistry_Macromolecule_PDB(string $pdb, array $records, [ string $pdbfile ])

Constructor for the class

Private Method Summary
void

parseResidues(array $records)

Makes the array of residues in the macromolecule

Fields inherited from Science_Chemistry_Macromolecule
$name, $molecules, $num_molecules

Public Method Details

Science_Chemistry_Macromolecule_PDB

public object Science_Chemistry_Macromolecule_PDB Science_Chemistry_Macromolecule_PDB( string $pdb, array $records, [ string $pdbfile ] )
  Constructor for the class

Parameter
string $pdb
PDB ID of the containing file
array $records
Array of lines comprising the macromolecule
string $pdbfile = >>""<<
reference to the PDB file object
Returns object Science_Chemistry_Macromolecule_PDB

See Also parseResidues()

Private Method Details

parseResidues

private void parseResidues( array $records )
  Makes the array of residues in the macromolecule

Parameter
array $records
Returns void

See Also Science_Chemistry_Macromolecule_PDB()
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